STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2172ISCps8, transposase; Identified by match to protein family HMM PF02371. (384 aa)    
Predicted Functional Partners:
CPS_0787
Transposase, IS110 family, truncated; Identified by similarity to SP:Q56897.
  
     0.759
CPS_2171
Conserved hypothetical protein; Identified by similarity to GP:28809001.
       0.551
CPS_0207
Identified by match to protein family HMM PF01656.
  
     0.523
CPS_0292
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0042.
  
     0.467
CPS_3260
Conserved hypothetical protein; Identified by similarity to OMNI:NT01MC0853.
  
     0.439
CPS_3375
ISCps6, transposase; Identified by match to protein family HMM PF01609.
  
     0.424
CPS_3981
Sensor histidine kinase; Identified by similarity to SP:Q07737; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.418
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.