STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2237Microbial collagenase; Identified by similarity to SP:P43154; match to protein family HMM PF01752. (667 aa)    
Predicted Functional Partners:
trx2
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
  
    0.533
CPS_1408
Neutral zinc metallopeptidase, M4 family; Identified by similarity to GP:24460066; match to protein family HMM PF00801; match to protein family HMM PF01447.
  
  
 0.507
CPS_0996
Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02103; Belongs to the glycosyl hydrolase 13 family.
  
   
 0.475
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.