STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2324Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092. (618 aa)    
Predicted Functional Partners:
CPS_2319
Denitrification regulatory protein nirQ; Identified by similarity to SP:Q51481; match to protein family HMM PF07728.
 
  
 0.961
norB
Nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.954
norC
Nitric-oxide reductase, C subunit; Identified by similarity to SP:Q52527; match to protein family HMM PF00034.
 
  
 0.949
CPS_4731
Putative transcriptional regulator NosR; Identified by similarity to SP:Q00790; match to protein family HMM PF04205.
 
    0.808
CPS_1884
Putative regulatory protein NosR; Identified by similarity to SP:Q00790; match to protein family HMM PF04205.
 
    0.793
nirN
Heme-binding protein NirN; Identified by similarity to OMNI:NTL03PA00510; match to protein family HMM PF00034; match to protein family HMM PF02239.
 
  
 0.790
nosD
Copper ABC transporter, periplasmic copper-binding protein; Identified by similarity to SP:P19843; match to protein family HMM PF05048.
  
    0.761
nosL
Protein disulfide isomerase NosL.
 
    0.728
nosZ
Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
  
    0.726
nosY
Copper ABC transporter, permease protein; Identified by similarity to SP:P19845.
  
  
 0.713
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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