STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2368Putative N-acetylglucosamine-6-sulfatase; Identified by similarity to GP:8101027; match to protein family HMM PF00884. (537 aa)    
Predicted Functional Partners:
CPS_2927
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA4168; match to protein family HMM PF03781.
 
   0.729
CPS_2367
Sulfatase family protein; Identified by similarity to GP:8101027; match to protein family HMM PF00884.
 
    
0.690
CPS_2986
Conserved hypothetical protein; Identified by similarity to GP:27358184; match to protein family HMM PF03781.
 
   0.599
CPS_2366
Lipase/acylhydrolase domain protein; Identified by match to protein family HMM PF00657.
       0.548
CPS_2372
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.524
atsA
Arylsulfatase; Identified by similarity to SP:P51691; match to protein family HMM PF00884.
 
    
0.477
CPS_2369
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
 
     0.460
CPS_2364
Identified by match to protein family HMM PF00884.
 
    
0.455
CPS_2842
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.429
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.