STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2370Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331. (457 aa)    
Predicted Functional Partners:
CPS_2377
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
 
     0.778
CPS_3740
Putative endoglucanase A; Identified by similarity to GP:43409; match to protein family HMM PF00933; match to protein family HMM PF01915.
 
   
 0.561
CPS_2646
PKD domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF00801.
  
   
 0.558
CPS_3725
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
   
 0.540
bglA
Beta-glucanase; Identified by similarity to SP:P45798; match to protein family HMM PF00722.
   
 0.516
CPS_2654
PKD domain protein; Identified by match to protein family HMM PF00801.
  
   
 0.515
CPS_2371
Transcription regulator, LacI family; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
       0.474
xarB
Xylosidase/arabinosidase; Identified by similarity to GP:7259476; match to protein family HMM PF00933; match to protein family HMM PF01915.
 
   
 0.451
CPS_3692
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
   
 0.427
CPS_2379
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
   
 0.422
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.