STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2395Hypothetical protein; Identified by Glimmer2; putative. (403 aa)    
Predicted Functional Partners:
ccmF
Cytochrome c-type biogenesis protein CcmF; Identified by match to protein family HMM PF01578; match to protein family HMM TIGR00353.
  
 
 0.625
CPS_4794
Putative voltage-gated potassium channel; Identified by similarity to SP:Q54397.
  
     0.591
CPS_4315
Putative urea transporter; Identified by match to protein family HMM PF03253.
 
     0.571
CPS_2396
Hypothetical protein; Identified by Glimmer2; putative.
       0.505
ccmH
Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.
  
  
 0.495
speB
Agmatinase; Identified by similarity to SP:P16936; match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family.
 
     0.481
CPS_3595
Identified by match to protein family HMM PF00293.
  
     0.462
CPS_1905
Identified by similarity to SP:Q03520; match to protein family HMM PF02798.
  
     0.422
CPS_0152
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.417
CPS_1668
Identified by similarity to SP:Q03520; match to protein family HMM PF02798.
  
     0.402
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.