STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2423Conserved hypothetical protein; Identified by similarity to OMNI:VC0131. (179 aa)    
Predicted Functional Partners:
CPS_2149
DTW domain protein; Identified by match to protein family HMM PF03942.
  
     0.711
CPS_0998
FHA domain protein; Identified by match to protein family HMM PF00498.
  
     0.490
CPS_4789
Identified by similarity to SP:P73283; match to protein family HMM PF00109; match to protein family HMM PF02801; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
     0.482
sixA
Phosphohistidine phosphatase SixA; Identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249.
  
     0.468
CPS_1905
Identified by similarity to SP:Q03520; match to protein family HMM PF02798.
  
     0.453
CPS_1668
Identified by similarity to SP:Q03520; match to protein family HMM PF02798.
  
     0.449
CPS_2424
Radical SAM domain/B12 binding domain protein; Identified by match to protein family HMM PF02310; match to protein family HMM PF04055.
       0.433
CPS_2422
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
       0.416
CPS_2421
Putative membrane protein; Identified by similarity to OMNI:NTL01SM00184.
       0.404
CPS_2395
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.402
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.