STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2427ABC transporter protein; Identified by match to protein family HMM PF00664. (554 aa)    
Predicted Functional Partners:
CPS_2428
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 
0.983
CPS_2429
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
 0.970
CPS_2430
VCBS repeat protein; This protein, the longest in Colwellia psychrerythraea 34H, consists largely of 19 copies of a repeat of approx. 100 amino acids; identified by match to protein family HMM TIGR01965.
 
  
 0.932
CPS_4325
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
  
 
0.927
CPS_4324
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
 
 0.876
CPS_2431
Hypothetical protein; Identified by Glimmer2; putative.
       0.716
CPS_4509
Putative toxin secretion protein; Identified by similarity to SP:P22519.
 
 
 0.627
CPS_1278
Putative lipoprotein.
  
     0.602
CPS_2426
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
CPS_2432
Putative lipoprotein.
       0.563
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.