STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2442Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches. (163 aa)    
Predicted Functional Partners:
CPS_1983
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
  0.904
pepD
Aminoacyl-histidine dipeptidase; Identified by similarity to SP:P15288; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893.
     
  0.900
pepA
Cytosol aminopeptidase A; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
  0.900
gshB
Glutathione synthetase; Identified by match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM TIGR01380; Belongs to the prokaryotic GSH synthase family.
     
  0.900
CPS_1363
Putative dipeptidase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887.
     
  0.900
ggt1
Gamma-glutamyltranspeptidase; Identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066.
     
  0.900
pepN
Identified by similarity to SP:P04825; match to protein family HMM PF01433; match to protein family HMM TIGR02414.
     
  0.900
gshA
Glutamate--cysteine ligase; Identified by match to protein family HMM PF04262; match to protein family HMM TIGR01434; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
  0.900
ggt2
Gamma-glutamyltranspeptidase; Identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066.
     
  0.900
CPS_4956
Identified by match to protein family HMM PF00883; Belongs to the peptidase M17 family.
     
  0.900
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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