STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2460Putative lipoprotein. (341 aa)    
Predicted Functional Partners:
CPS_2034
Conserved domain protein; Identified by similarity to OMNI:NTL02ML4239.
  
     0.760
CPS_2993
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.717
CPS_1445
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.708
CPS_3250
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS2290.
  
     0.695
CPS_3376
Putative lipoprotein; Identified by match to protein family HMM PF06863.
  
     0.689
CPS_0419
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.686
CPS_3244
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
  
     0.684
CPS_3252
Capsular polysaccharide biosynthesis protein, homolog; Identified by similarity to GP:6601342.
  
     0.680
CPS_4167
Sodium:dicarboxylate symporter family/bacterial extracellular solute-binding family 3 protein; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
     0.673
CPS_3377
Putative lipoprotein; Identified by match to protein family HMM PF06742; match to protein family HMM PF06863.
 
     0.669
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.