Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CPS_2467Hypothetical protein; Identified by Glimmer2; putative. (50 aa)    
Predicted Functional Partners:
CPS_0993
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
  
 
 0.752
CPS_2693
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
 
 0.752
CPS_3698
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
  
 
 0.752
CPS_2468
Nitroreductase family protein; Identified by similarity to GP:609234; match to protein family HMM PF00881; match to protein family HMM TIGR02476.
       0.636
tolR
tolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.515
CPS_1851
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00200.
  
 
 0.515
exbD1
Biopolymer transport exbD protein; Identified by match to protein family HMM PF02472.
  
 
 0.515
exbD2
Biopolymer transport exbD protein; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
  
 
 0.515
exbD3
Biopolymer transport exbD protein; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
  
 
 0.515
tolQ
tolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.433
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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