STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2472Porin; Identified by match to protein family HMM PF00267. (358 aa)    
Predicted Functional Partners:
CPS_3847
Porin; Identified by match to protein family HMM PF00267.
  
  
 
0.902
CPS_1530
vacJ lipoprotein; Identified by match to protein family HMM PF04333.
   
 
 0.689
CPS_2641
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.637
nhaC1
Na+/H+ antiporter NhaC; Identified by match to protein family HMM PF03553; match to protein family HMM TIGR00931.
     
 0.578
CPS_2471
L-serine dehydratase 1, truncated; Identified by match to protein family HMM PF03315.
       0.476
CPS_2475
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
 
 0.469
btuB
tonB-dependent vitamin B12 receptor; Identified by similarity to SP:P06129; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
 
 
 0.427
CPS_3650
Conserved hypothetical protein; Identified by similarity to OMNI:SO1619.
  
     0.423
CPS_2473
DNA-binding response regulator; Identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.419
CPS_2474
Bacterial extracellular solute-binding protein, family 3.
       0.419
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.