STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2474Bacterial extracellular solute-binding protein, family 3. (265 aa)    
Predicted Functional Partners:
CPS_2475
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
 
 0.862
CPS_2473
DNA-binding response regulator; Identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.773
CPS_3879
Putative ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P39174.
  
     0.751
CPS_2793
Putative amino acid-binding protein.
  
     0.749
CPS_4859
Putative cation efflux protein.
  
     0.732
CPS_3840
Putative lipoprotein.
  
     0.721
CPS_2231
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.700
CPS_2655
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.685
CPS_2363
Conserved hypothetical protein; Identified by similarity to GP:27362249.
  
     0.680
CPS_1277
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.674
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.