STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2573Identified by match to protein family HMM PF01979; match to protein family HMM PF07676. (1071 aa)    
Predicted Functional Partners:
CPS_0333
Conserved hypothetical protein; Identified by similarity to OMNI:CC0476.
 
     0.687
CPS_1348
Putative Xaa-Pro dipeptidase; Identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969.
  
     0.646
CPS_0219
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.632
CPS_3548
Putative membrane protein; Identified by match to protein family HMM PF05684.
  
     0.604
CPS_0329
Conserved hypothetical protein; Identified by similarity to OMNI:SO0321.
  
     0.579
CPS_0734
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.576
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.572
CPS_0735
Hypothetical protein; Identified by Glimmer2; putative.
  
 
   0.559
cpoB
TPR domain protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.546
CPS_3511
Identified by match to protein family HMM PF00326.
 
    0.542
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.