STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2648Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294. (336 aa)    
Predicted Functional Partners:
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
 
 
 0.934
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
  
 
 0.932
CPS_0984
Identified by match to protein family HMM PF00128.
 
 
 0.931
pgi1
Glucose-6-phosphate isomerase; Identified by similarity to SP:P11537; match to protein family HMM PF00342.
  
 
 0.923
pgi2
Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342.
  
 
 0.923
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 0.920
CPS_2647
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XA1535; match to protein family HMM PF07221.
 
   
 0.913
fbp
Fructose-1,6-bisphosphatase; Identified by similarity to SP:P19911; match to protein family HMM PF00316.
     
 0.911
CPS_2649
Identified by match to protein family HMM PF07690; match to protein family HMM TIGR01272.
     
 0.788
CPS_2650
Identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180.
       0.785
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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