STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2668Conserved hypothetical protein; Identified by similarity to OMNI:VCA0634. (242 aa)    
Predicted Functional Partners:
CPS_2001
Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486.
  
  
 0.596
CPS_0276
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.591
CPS_2614
Conserved hypothetical protein; Identified by similarity to OMNI:SO2179.
  
     0.527
CPS_4054
Conserved hypothetical protein; Identified by similarity to OMNI:PSPTO3671.
  
     0.485
CPS_4901
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.467
CPS_2666
Efflux transporter, RND family, MFP subunit, AcrA/E family; Identified by similarity to SP:P76397; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.454
CPS_2667
Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.454
CPS_0014
Conserved hypothetical protein TIGR00257; Identified by match to protein family HMM PF01205; match to protein family HMM TIGR00257.
   
    0.418
ccmD
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.418
CPS_0703
Conserved hypothetical protein; Identified by similarity to SP:Q9KUB7.
  
     0.414
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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