Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPS_2700 | CPS_2701 | CPS_2700 | CPS_2701 | dsbA-like thioredoxin domain protein; Identified by match to protein family HMM PF01323. | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | 0.913 |
CPS_2701 | CPS_2700 | CPS_2701 | CPS_2700 | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | dsbA-like thioredoxin domain protein; Identified by match to protein family HMM PF01323. | 0.913 |
CPS_2701 | CPS_2702 | CPS_2701 | CPS_2702 | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | Peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389. | 0.496 |
CPS_2701 | CPS_2703 | CPS_2701 | CPS_2703 | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | 0.476 |
CPS_2701 | dsbC | CPS_2701 | CPS_4095 | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | 0.425 |
CPS_2702 | CPS_2701 | CPS_2702 | CPS_2701 | Peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389. | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | 0.496 |
CPS_2702 | CPS_2703 | CPS_2702 | CPS_2703 | Peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389. | TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | 0.771 |
CPS_2703 | CPS_2701 | CPS_2703 | CPS_2701 | TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | 0.476 |
CPS_2703 | CPS_2702 | CPS_2703 | CPS_2702 | TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. | Peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389. | 0.771 |
dsbC | CPS_2701 | CPS_4095 | CPS_2701 | Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Disulfide bond formation protein, DsbB family; Identified by match to protein family HMM PF02600; Belongs to the DsbB family. | 0.425 |