STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2723Putative iron-regulated membrane protein; Identified by match to protein family HMM PF03929. (372 aa)    
Predicted Functional Partners:
fhuE
FhuE receptor; Identified by similarity to SP:P16869; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
 
  
 0.916
CPS_4959
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
 
  
 0.722
CPS_2576
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
   
 0.647
CPS_4488
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
   
 0.647
CPS_4883
Putative membrane protein; Identified by match to protein family HMM PF03929.
  
     0.647
CPS_3425
tonB-dependent siderophore receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
 
  
 0.646
CPS_1902
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
   
 0.632
CPS_3971
TPR domain protein.
  
     0.583
CPS_1347
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  
 0.558
CPS_0263
Putative iron-regulated membrane protein; Identified by similarity to OMNI:NTL01XA0270; match to protein family HMM PF03929.
  
     0.550
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.