STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2784Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches. (133 aa)    
Predicted Functional Partners:
CPS_2783
Putative membrane protein.
 
   
 0.953
CPS_2785
Sensor histidine kinase; Identified by similarity to SP:P30844; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
     0.927
CPS_2782
Hypothetical protein; Identified by Glimmer2; putative.
       0.798
CPS_2786
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
     0.677
CPS_2787
apbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.581
CPS_2788
Conserved hypothetical protein; Identified by similarity to OMNI:SO2102.
       0.494
CPS_2789
Putative lipoprotein.
       0.494
CPS_2790
Putative electron transfer protein; Identified by similarity to SP:P33926.
       0.412
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.