STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2806Conserved hypothetical protein; Identified by similarity to OMNI:SO2597; match to protein family HMM PF06980. (696 aa)    
Predicted Functional Partners:
CPS_2805
Conserved hypothetical protein; Identified by similarity to OMNI:SO2596; match to protein family HMM PF07044.
 
    0.964
CPS_2804
BNR repeat protein.
 
    0.900
CPS_3433
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03922; match to protein family HMM PF07044.
 
    0.888
CPS_2803
Putative membrane protein.
 
    0.857
CPS_3430
BNR repeat protein.
 
    0.825
CPS_3429
Putative membrane protein.
 
    0.785
CPS_0637
Conserved hypothetical protein; Identified by similarity to OMNI:SO0615.
  
     0.648
CPS_1192
Conserved hypothetical protein; Identified by similarity to OMNI:SO2934.
  
     0.605
CPS_3751
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.601
CPS_0968
Conserved hypothetical protein; Identified by similarity to OMNI:SO0554.
  
     0.589
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.