STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2871Cold-active alkaline serine protease; Identified by similarity to GP:2921857; match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF04151; Belongs to the peptidase S8 family. (789 aa)    
Predicted Functional Partners:
CPS_2872
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
 
     0.822
CPS_0754
Alkaline serine protease, subtilase family; Identified by similarity to GP:13540819; match to protein family HMM PF00082.
  
     0.726
topB
DNA topoisomerase III; Identified by similarity to SP:P14294; match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056.
      
 0.695
CPS_0543
Putative methylase.
  
     0.644
recB
Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...]
      
 0.617
CPS_1192
Conserved hypothetical protein; Identified by similarity to OMNI:SO2934.
  
     0.574
CPS_2634
This is a extracellular ribonuclease/nuclease fusion protein; identified by similarity to PIR:T31332; match to protein family HMM PF03372; match to protein family HMM PF04231.
 
   
 0.572
CPS_0549
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.462
CPS_2870
Hypothetical protein; Identified by Glimmer2; putative.
       0.427
CPS_3470
Neutral zinc metallopeptidase, M1 family; Identified by match to protein family HMM PF01433.
 
 
 0.414
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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