STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2880Putative lipoprotein. (398 aa)    
Predicted Functional Partners:
murQ
Glucokinase regulator-related protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
    0.939
nagZ2
Beta-hexosaminidase; Identified by similarity to GP:3426176; match to protein family HMM PF00933.
  
 0.938
CPS_1026
Identified by match to protein family HMM PF01869.
 
    0.575
CPS_2654
PKD domain protein; Identified by match to protein family HMM PF00801.
 
     0.527
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.514
CPS_1173
Mandelate racemase/muconate lactonizing enzyme family protein; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746.
 
    0.512
xarB
Xylosidase/arabinosidase; Identified by similarity to GP:7259476; match to protein family HMM PF00933; match to protein family HMM PF01915.
  
 0.448
CPS_3740
Putative endoglucanase A; Identified by similarity to GP:43409; match to protein family HMM PF00933; match to protein family HMM PF01915.
  
 0.434
CPS_3725
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
  
 0.427
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.