STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2958ISCps3, transposase orfB; Identified by similarity to SP:P05822; match to protein family HMM PF00665. (295 aa)    
Predicted Functional Partners:
CPS_2959
ISCps3, transposase orfA; Identified by match to protein family HMM PF01527.
  
  
 0.794
CPS_2410
ISCps2, transposase orfA; Identified by match to protein family HMM PF01527.
 
  
 0.610
CPS_1290
ISCps2, transposase orfA; Identified by match to protein family HMM PF01527; match to protein family HMM TIGR01199.
 
  
 0.593
CPS_2960
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
CPS_1289
ISCps2, transposase orfB; Identified by similarity to OMNI:NTL01RS0578; match to protein family HMM PF00665.
 
  
0.455
CPS_0490
Putative site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
     
 0.444
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.