STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_2998FAD binding protein; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. (1069 aa)    
Predicted Functional Partners:
CPS_4688
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.
  
 
 0.816
CPS_2083
FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.
  
 0.806
CPS_2999
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CPS_4687
Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.
  
 
 0.762
CPS_4014
Conserved hypothetical protein; Identified by similarity to OMNI:PP0313.
 
 
 0.750
CPS_4015
Putative electron transfer flavoprotein, alpha subunit; Identified by match to protein family HMM PF00766.
 
 
 0.694
lldP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.694
etfB
Electron transfer flavoprotein, beta subunit; Identified by match to protein family HMM PF01012.
  
 
 0.679
CPS_3000
Hypothetical protein; Identified by Glimmer2; putative.
       0.668
CPS_3001
Hypothetical protein; Identified by Glimmer2; putative.
       0.668
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.