STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3071Conserved domain protein; Identified by similarity to OMNI:NTL03PA00919. (172 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase thioredoxin domain protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.613
msrB2
methionine-R-sulfoxide reductase; Identified by similarity to SP:P14930; match to protein family HMM PF01641; match to protein family HMM TIGR00357.
       0.610
CPS_3072
Hypothetical protein; Identified by Glimmer2; putative.
       0.592
CPS_3068
Putative peptide methionine sulfoxide reductase MsrA; Identified by match to protein family HMM PF01625.
       0.530
CPS_3073
Hypothetical protein; Identified by Glimmer2; putative.
       0.448
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.