Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CPS_3178 | CPS_3180 | CPS_3178 | CPS_3180 | Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family. | Identified by match to protein family HMM PF02557. | 0.602 |
CPS_3178 | CPS_3181 | CPS_3178 | CPS_3181 | Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.433 |
CPS_3178 | dapE | CPS_3178 | CPS_3179 | Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.697 |
CPS_3180 | CPS_3178 | CPS_3180 | CPS_3178 | Identified by match to protein family HMM PF02557. | Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family. | 0.602 |
CPS_3180 | CPS_3181 | CPS_3180 | CPS_3181 | Identified by match to protein family HMM PF02557. | Hypothetical protein; Identified by Glimmer2; putative. | 0.592 |
CPS_3180 | dapE | CPS_3180 | CPS_3179 | Identified by match to protein family HMM PF02557. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.745 |
CPS_3181 | CPS_3178 | CPS_3181 | CPS_3178 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family. | 0.433 |
CPS_3181 | CPS_3180 | CPS_3181 | CPS_3180 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF02557. | 0.592 |
CPS_3181 | dapE | CPS_3181 | CPS_3179 | Hypothetical protein; Identified by Glimmer2; putative. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.546 |
dapE | CPS_3178 | CPS_3179 | CPS_3178 | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617; Belongs to the ArsC family. | 0.697 |
dapE | CPS_3180 | CPS_3179 | CPS_3180 | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Identified by match to protein family HMM PF02557. | 0.745 |
dapE | CPS_3181 | CPS_3179 | CPS_3181 | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | Hypothetical protein; Identified by Glimmer2; putative. | 0.546 |