STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3232Aminotransferase, class I; Identified by match to protein family HMM PF00155. (411 aa)    
Predicted Functional Partners:
argHA
Argininosuccinate lyase/amino-acid N-acetyltransferase; Identified by similarity to SP:Q9K3D6; match to protein family HMM PF00206; match to protein family HMM PF00583; match to protein family HMM TIGR00838; In the N-terminal section; belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
  
 
 0.943
CPS_2904
Glu/Leu/Phe/Val dehydrogenase; Identified by match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.932
CPS_2190
Aminotransferase, class V; Identified by similarity to GP:2239081; match to protein family HMM PF00266.
  
 0.930
CPS_4878
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
  
 0.930
CPS_3390
Aminotransferase, class I; Identified by match to protein family HMM PF00155.
   
 0.924
aspC
Aspartate aminotransferase; Identified by similarity to SP:P00509; match to protein family HMM PF00155.
   
 0.924
argA
Amino-acid N-acetyltransferase; Identified by similarity to SP:P22567; match to protein family HMM PF00583; match to protein family HMM PF00696; match to protein family HMM TIGR01890; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.923
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.922
CPS_2080
Identified by match to protein family HMM PF00920; Belongs to the IlvD/Edd family.
  
 
 0.921
ilvD
Dihydroxy-acid dehydratase; Identified by similarity to SP:P05791; match to protein family HMM PF00920; match to protein family HMM TIGR00110; Belongs to the IlvD/Edd family.
  
 
 0.921
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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