STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3243Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535. (337 aa)    
Predicted Functional Partners:
CPS_3244
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
  
 0.953
CPS_3252
Capsular polysaccharide biosynthesis protein, homolog; Identified by similarity to GP:6601342.
 
  
 0.797
CPS_3249
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
  
 0.796
CPS_3250
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS2290.
 
  
 0.789
CPS_3248
Putative polysaccharide biosynthesis glycosyltransferase; Identified by similarity to SP:Q04664; match to protein family HMM PF02397.
  
 0.632
CPS_3253
Putative polysaccharide pyruvyl transferase.
 
    0.615
CPS_5023
Bacterial sugar transferase domain protein; Identified by match to protein family HMM PF02397.
  
 0.549
CPS_0308
UDP-N-acetylglucosamine 2-epimerase/UDP-N-acetyl-D-mannosamine dehydrogenase; Identified by similarity to SP:P27829; match to protein family HMM PF00984; match to protein family HMM PF02350; match to protein family HMM PF03721; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.547
CPS_3242
Conserved hypothetical protein; Identified by similarity to GP:27361780.
       0.538
galE
UDP-glucose 4-epimerase; Identified by match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.486
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.