STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3249Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563. (425 aa)    
Predicted Functional Partners:
CPS_3250
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS2290.
 
 
 0.973
CPS_3645
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
  
  
  0.924
CPS_0578
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
  
  
  0.922
CPS_0580
Tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706.
 
 
 0.918
CPS_5025
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:P76388; match to protein family HMM PF02563.
     
  0.900
CPS_3252
Capsular polysaccharide biosynthesis protein, homolog; Identified by similarity to GP:6601342.
 
  
 0.853
CPS_3253
Putative polysaccharide pyruvyl transferase.
 
  
 0.819
CPS_3244
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
  
 0.805
CPS_3247
Glycosyl transferase, WecB/TagA/CpsF family; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.
 
   
 0.802
CPS_3243
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
  
 0.796
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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