STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3253Putative polysaccharide pyruvyl transferase. (381 aa)    
Predicted Functional Partners:
CPS_3252
Capsular polysaccharide biosynthesis protein, homolog; Identified by similarity to GP:6601342.
 
     0.949
CPS_3254
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
    0.887
CPS_3249
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
  
 0.819
CPS_3250
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS2290.
 
  
 0.810
CPS_3244
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.
 
  
 0.800
CPS_3247
Glycosyl transferase, WecB/TagA/CpsF family; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.
 
   
 0.731
CPS_2629
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.
  
     0.672
CPS_3255
Identified by match to protein family HMM PF01757.
       0.623
CPS_2460
Putative lipoprotein.
  
     0.621
CPS_3243
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
    0.615
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.