STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3313Putative lipoprotein. (411 aa)    
Predicted Functional Partners:
CPS_3315
Putative nitrate ABC transporter, permease protein; Identified by similarity to GP:2642138; match to protein family HMM PF00528.
 
     0.743
CPS_3314
Putative nitrate ABC transporter, ATP-binding protein; Identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
     0.734
CPS_1693
TonB-dependent receptor; Identified by similarity to OMNI:CC2287; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
  
     0.640
CPS_0927
Conserved hypothetical protein; Identified by similarity to OMNI:SO0306.
  
     0.584
CPS_4602
Conserved hypothetical protein; Identified by similarity to SP:O67300.
  
 
 0.565
CPS_0693
Conserved hypothetical protein; Identified by similarity to GP:29339792.
  
 
 0.552
CPS_3316
Putative nitrate ABC transporter, periplasmic nitrate-binding protein; Identified by similarity to SP:P38043.
 
     0.547
CPS_3976
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:27360409.
  
    0.531
CPS_0554
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSA0344.
  
     0.516
CPS_3756
Conserved hypothetical protein; Identified by similarity to OMNI:SO1824.
  
    0.510
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.