STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3315Putative nitrate ABC transporter, permease protein; Identified by similarity to GP:2642138; match to protein family HMM PF00528. (315 aa)    
Predicted Functional Partners:
CPS_3314
Putative nitrate ABC transporter, ATP-binding protein; Identified by similarity to SP:P73450; match to protein family HMM PF00005; match to protein family HMM TIGR01184.
 
 0.998
CPS_3316
Putative nitrate ABC transporter, periplasmic nitrate-binding protein; Identified by similarity to SP:P38043.
 
 0.995
nasA
Nitrate reductase; Identified by similarity to SP:Q06457; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.978
napA
Periplasmic nitrate reductase, large subunit; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
    
 0.903
napB
Periplasmic nitrate reductase, cytochrome c-type subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
     
  0.900
CPS_1930
Putative sulfonate ABC transporter, ATP-binding protein; Identified by similarity to SP:P97027; match to protein family HMM PF00005.
  
 0.811
CPS_3313
Putative lipoprotein.
 
     0.743
nirB
Nitrite reductase [NAD(P)H], large subunit; Identified by similarity to SP:P08201; match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 0.717
CPS_3317
Putative response regulator NasT; Identified by similarity to PIR:S70540; match to protein family HMM PF00072; match to protein family HMM PF03861.
 
   
 0.672
CPS_0685
Conserved hypothetical protein; Identified by similarity to GP:27361783.
 
  
 0.596
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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