STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3332Hypothetical protein; Identified by Glimmer2; putative. (1123 aa)    
Predicted Functional Partners:
CPS_3333
Hypothetical protein; Identified by Glimmer2; putative.
       0.732
gspJ
General secretion pathway protein J; Identified by similarity to SP:Q00517; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532.
  
 
 0.707
gspK
General secretion pathway protein K; Identified by similarity to GP:4139244; match to protein family HMM PF03934.
  
 
 0.668
CPS_2124
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
  
 0.550
pilB
Type IV pilus biogenesis protein PilB; Identified by similarity to GP:151065; match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.
  
 
 0.484
mshE
MSHA biogenesis protein MshE; Identified by similarity to OMNI:SO4109; match to protein family HMM PF00437; match to protein family HMM PF05157.
  
 
 0.484
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.484
pilC
Type IV pilus biogenesis protein PilC; Identified by similarity to GP:151066; match to protein family HMM PF00482.
  
  
 0.451
mshG
MSHA biogenesis protein MshG; Identified by similarity to OMNI:VC0406; match to protein family HMM PF00482.
  
  
 0.451
gspF
General secretion pathway protein F; Identified by similarity to GP:4139238; match to protein family HMM PF00482; match to protein family HMM TIGR02120.
  
  
 0.451
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.