STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3363Conserved hypothetical protein; Identified by similarity to GP:28809540. (702 aa)    
Predicted Functional Partners:
CPS_3362
Putative lipoprotein.
     
 0.794
CPS_0653
Conserved hypothetical protein; Identified by similarity to GP:28809921.
  
     0.681
CPS_0652
Conserved hypothetical protein; Identified by similarity to GP:28809920.
  
     0.664
CPS_2704
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
 
 
 0.662
CPS_3010
Conserved hypothetical protein; Identified by similarity to GP:27359990.
  
     0.593
CPS_2462
Conserved hypothetical protein; Identified by similarity to GP:28806358.
  
    0.536
CPS_3361
Hypothetical protein; Identified by Glimmer2; putative.
       0.470
CPS_2146
Conserved hypothetical protein; Identified by similarity to GP:28807861.
 
     0.465
CPS_3364
Hypothetical protein; Identified by Glimmer2; putative.
       0.444
CPS_0514
Tryptophan-rich conserved hypothetical protein; Identified by similarity to GP:28809962; match to protein family HMM TIGR02450.
  
     0.438
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.