STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3370Alpha-amylase; Identified by similarity to SP:P22630; match to protein family HMM PF00128. (470 aa)    
Predicted Functional Partners:
CPS_0996
Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02103; Belongs to the glycosyl hydrolase 13 family.
 
 0.952
CPS_1694
Putative pullulanase; Identified by match to protein family HMM PF02922; match to protein family HMM TIGR02103; Belongs to the glycosyl hydrolase 13 family.
 
 0.949
CPS_0984
Identified by match to protein family HMM PF00128.
     
 0.903
CPS_0388
Putative amino acid permease; Identified by match to protein family HMM PF00324.
   
 0.591
CPS_2029
Amino acid permease family protein; Identified by similarity to SP:P33016; match to protein family HMM PF00324.
   
 0.591
CPS_2040
Amino acid permease family protein; Identified by similarity to SP:O06005; match to protein family HMM PF00324.
   
 0.591
CPS_0977
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.502
CPS_3369
Identified by match to protein family HMM PF00854; match to protein family HMM TIGR00924.
  
 
 0.468
CPS_4206
Identified by match to protein family HMM PF04464.
  
     0.417
CPS_4009
Putative transporter, BCCT family protein.
  
   
 0.414
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.