STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3373Identified by match to protein family HMM PF00850. (300 aa)    
Predicted Functional Partners:
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
    
 0.654
CPS_2946
Identified by match to protein family HMM PF00176.
  
 
 0.572
CPS_0436
Conserved hypothetical protein; Identified by similarity to GP:2160521; match to protein family HMM PF00400.
  
 
 0.544
udk
Uridine kinase; Identified by similarity to SP:P31218; match to protein family HMM PF00485; match to protein family HMM TIGR00235.
   
 0.508
CPS_3404
Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434.
    
 0.508
hepA
RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.508
CPS_4877
Putative acetoin utilization protein AcuB; Identified by similarity to SP:P39066; match to protein family HMM PF00571.
 
    0.508
CPS_4230
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.489
CPS_0765
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.485
CPS_4706
Putative lipoprotein; Identified by match to protein family HMM PF00400.
    
 0.485
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.