STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3433Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03922; match to protein family HMM PF07044. (453 aa)    
Predicted Functional Partners:
CPS_3432
Conserved hypothetical protein; Identified by similarity to OMNI:PP0765; match to protein family HMM PF06980.
 
    0.961
CPS_2806
Conserved hypothetical protein; Identified by similarity to OMNI:SO2597; match to protein family HMM PF06980.
 
    0.888
CPS_3430
BNR repeat protein.
 
  
 0.888
CPS_3429
Putative membrane protein.
 
  
 0.854
CPS_2804
BNR repeat protein.
  
 0.843
CPS_2803
Putative membrane protein.
 
  
 0.797
CPS_4194
Putative major outer membrane lipoprotein; Identified by similarity to SP:P02940.
    
 
 0.644
CPS_3434
Oxidoreductase, GMC family; Identified by similarity to SP:Q00593; match to protein family HMM PF00732; match to protein family HMM PF05199.
       0.515
CPS_3435
Hypothetical protein; Identified by Glimmer2; putative.
       0.490
CPS_0806
Putative membrane protein.
 
  
 0.459
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.