STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3442Putative arsenical-resistance protein; Identified by match to protein family HMM PF01758. (366 aa)    
Predicted Functional Partners:
CPS_3358
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 0.865
CPS_3443
Transcriptional regulator, LuxR family; Identified by similarity to OMNI:CC2921; match to protein family HMM PF00196.
       0.773
CPS_3444
Identified by match to protein family HMM PF01292.
       0.701
CPS_3445
Hypothetical protein; Identified by Glimmer2; putative.
       0.602
CPS_2453
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
 
  
 0.451
CPS_0579
Phosphotyrosine protein phosphatase; Identified by similarity to SP:P75880; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.444
CPS_3015
Phosphotyrosine protein phosphatase; Identified by similarity to SP:P53433; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.444
CPS_1916
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.442
glnS
glutaminyl-tRNA synthetase; Identified by similarity to SP:P00962; match to protein family HMM PF00749; match to protein family HMM PF03950; match to protein family HMM TIGR00440.
 
      0.410
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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