STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3464EAL domain protein; Identified by match to protein family HMM PF00563. (406 aa)    
Predicted Functional Partners:
CPS_4398
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.536
cysD
Sulfate adenylate transferase, subunit 2; Identified by similarity to SP:P21156; match to protein family HMM PF01507; match to protein family HMM TIGR02039.
 
      0.534
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
     0.493
CPS_0215
Conserved hypothetical protein; Identified by similarity to OMNI:SO2439.
  
     0.489
putP
Proline/sodium symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.469
CPS_0409
Identified by match to protein family HMM PF04509.
  
     0.466
CPS_4407
Conserved hypothetical protein; Identified by similarity to OMNI:VCA0034.
  
     0.464
CPS_3465
Identified by match to protein family HMM PF03553.
       0.441
fliH
Flagellar assembly protein FliH; Identified by match to protein family HMM PF02108.
 
     0.420
CPS_0394
Response regulator/GGDEF/EAL domain protein; Identified by similarity to OMNI:NTL01BS1343; match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
   
 0.408
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.