STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hppD4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263. (351 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase; Identified by match to protein family HMM PF00351; match to protein family HMM TIGR01267.
 
  
 0.968
CPS_3390
Aminotransferase, class I; Identified by match to protein family HMM PF00155.
  
 
 0.943
aspC
Aspartate aminotransferase; Identified by similarity to SP:P00509; match to protein family HMM PF00155.
  
 
 0.943
hisC
Histidinol-phosphate aminotransferase; Identified by similarity to SP:P10369; match to protein family HMM PF00155; match to protein family HMM TIGR01141; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.915
phhB
Pterin-4-alpha-carbinolamine dehydratase; Identified by match to protein family HMM PF01329.
  
  
 0.884
maiA
Maleylacetoacetate isomerase; Identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262.
 
  
 0.879
CPS_3763
Identified by match to protein family HMM PF01557.
 
  
 0.847
CPS_2708
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
   
 0.833
mccB
Methylcrotonyl CoA carboxylase, beta subunit; Identified by similarity to SP:Q9HCC0; match to protein family HMM PF01039.
 
  
 0.796
CPS_4358
Identified by match to protein family HMM PF00903.
 
   
 0.582
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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