STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3603Conserved domain protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches. (555 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
  0.800
CPS_2696
Identified by match to protein family HMM PF00278; match to protein family HMM PF02784.
     
  0.800
CPS_2875
Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
  0.800
CPS_4492
Putative pyridoxal-dependent decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
  0.800
CPS_0971
Conserved hypothetical protein TIGR00238; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238.
  
     0.721
cheR
Chemotaxis protein methyltransferase CheR; Identified by match to protein family HMM PF01739; match to protein family HMM PF03705.
    
   0.695
CPS_5004
Identified by match to protein family HMM PF04932.
  
    0.503
CPS_4763
Conserved hypothetical protein TIGR00462; Identified by match to protein family HMM PF00152; match to protein family HMM TIGR00462.
 
  
 0.433
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.