STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3630Identified by match to protein family HMM PF01979. (525 aa)    
Predicted Functional Partners:
CPS_3629
Identified by match to protein family HMM PF01979.
    
0.985
CPS_1348
Putative Xaa-Pro dipeptidase; Identified by similarity to GP:4887599; match to protein family HMM PF01979; match to protein family HMM PF07969.
  
     0.628
CPS_0535
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
  
     0.591
CPS_3085
Identified by match to protein family HMM PF01979.
  
     0.586
CPS_0333
Conserved hypothetical protein; Identified by similarity to OMNI:CC0476.
  
     0.556
CPS_3091
Putative peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389.
  
     0.544
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.527
hutH
Histidine ammonia-lyase; Identified by match to protein family HMM PF00221; match to protein family HMM TIGR01225.
  
  
 0.526
CPS_3631
GGDEF domain protein; Identified by similarity to OMNI:VC1216; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00254; match to protein family HMM TIGR02481.
       0.506
CPS_1968
Putative OmpA family protein; Identified by similarity to SP:P17315; similarity to SP:P38370.
  
     0.460
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.