STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3720Putative glycosyl hydrolase. (336 aa)    
Predicted Functional Partners:
CPS_3722
Conserved hypothetical protein; Identified by similarity to GP:27359243.
 
     0.904
CPS_3721
Putative glycosyl hydrolase.
 
    
0.842
CPS_3714
Glycosyl hydrolase, family 30; Identified by match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family.
 
     0.678
bglA
Beta-glucanase; Identified by similarity to SP:P45798; match to protein family HMM PF00722.
     0.642
CPS_3726
Glycosyl hydrolase, family 16; Identified by similarity to SP:P23903; match to protein family HMM PF00722.
 
     0.622
CPS_3738
Putative membrane protein; Identified by match to protein family HMM PF07690.
 
     0.602
CPS_2383
Putative surface protein.
  
     0.500
CPS_3718
Response regulator; Identified by match to protein family HMM PF00072.
       0.441
CPS_3719
Sensor histidine kinase; Identified by similarity to SP:P33357; match to protein family HMM PF02518; match to protein family HMM PF06580.
       0.441
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.