STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3727Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (279 aa)    
Predicted Functional Partners:
CPS_1680
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
     0.649
CPS_2677
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
     0.605
pfaA
Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.
 
 
 0.544
CPS_2720
3-hydroxyacyl-CoA dehydrogenase; Identified by similarity to GP:13310127; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.525
CPS_3728
Identified by match to protein family HMM PF00903.
       0.508
CPS_3024
Oxidoreductase, short-chain dehydrogenase/reductase family, truncated; Identified by similarity to SP:P39345.
  
     0.507
pfaC
Polyunsaturated fatty acid synthase PfaC; Identified by similarity to GP:6691656; match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM PF07977; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.477
CPS_1835
Serine protease, trypsin family; Identified by match to protein family HMM PF00089.
  
 
 0.472
phbB1
acetoacetyl-CoA reductase; Identified by similarity to SP:P23238; match to protein family HMM PF00106; match to protein family HMM TIGR01829.
  
     0.469
CPS_0665
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P51831; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.468
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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