STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3751TPR domain protein; Identified by match to protein family HMM PF00515. (431 aa)    
Predicted Functional Partners:
CPS_3756
Conserved hypothetical protein; Identified by similarity to OMNI:SO1824.
 
 
 0.953
CPS_3752
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.952
CPS_3755
MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
 
     0.945
exbB2
Biopolymer transport exbB protein; Identified by match to protein family HMM PF01618.
 
     0.943
exbD2
Biopolymer transport exbD protein; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
   0.912
CPS_3972
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.795
CPS_3976
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:27360409.
 
 
 0.795
CPS_3975
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
     0.782
CPS_4762
TonB domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
   0.782
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 0.778
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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