STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3768Conserved hypothetical protein; Identified by match to protein family HMM TIGR01620. (375 aa)    
Predicted Functional Partners:
CPS_3769
Conserved hypothetical protein; Identified by similarity to GP:10719748; match to protein family HMM PF04317.
  
 0.992
phhA
Phenylalanine-4-hydroxylase; Identified by match to protein family HMM PF00351; match to protein family HMM TIGR01267.
       0.555
CPS_0153
Conserved hypothetical protein; Identified by similarity to SP:P32680.
  
     0.548
CPS_3767
Hypothetical protein; Identified by Glimmer2; putative.
       0.508
CPS_0595
Conserved hypothetical protein; Identified by similarity to OMNI:SO2622.
  
     0.490
CPS_4343
Thioredoxin domain protein; Identified by match to protein family HMM PF00085.
  
    0.482
CPS_2610
Putative membrane protein; Identified by similarity to OMNI:NTL01YP1193.
  
     0.481
CPS_2611
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SF2126; match to protein family HMM PF07208; Belongs to the UPF0352 family.
  
     0.456
CPS_0703
Conserved hypothetical protein; Identified by similarity to SP:Q9KUB7.
  
     0.453
seqA
seqA protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.415
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.