STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspA1Phage shock protein A; Identified by similarity to SP:P23853; match to protein family HMM PF04012. (221 aa)    
Predicted Functional Partners:
pspC
Phage shock protein C; Identified by similarity to SP:P23855; match to protein family HMM PF04024.
 
 
 0.991
pspB
Phage shock protein B; Identified by similarity to SP:P23854; match to protein family HMM PF06667.
 
 
 0.988
CPS_4165
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
    
 
 0.870
pspF
Sigma-54 depedent transcriptional activator PspF; Identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
 
 
 
 0.808
CPS_4752
Phage shock domain protein; Identified by similarity to SP:P23855; match to protein family HMM PF04024.
  
 
 0.763
CPS_2475
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
    
 
 0.693
CPS_4117
Sensor histidine kinase/response regulator; Identified by similarity to SP:P26607; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518.
    
 
 0.693
CPS_4481
Sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL01SS01420; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00515; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF07719.
    
 
 0.693
CPS_4190
Conserved hypothetical protein; Identified by similarity to OMNI:SO3764.
  
  
 0.679
CPS_0068
Sensory box sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL03PA03271; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 
 0.676
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.