STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sapBPeptide ABC transporter, permease protein; Identified by similarity to SP:P36668; match to protein family HMM PF00528. (342 aa)    
Predicted Functional Partners:
sapA
Peptide ABC transporter, periplasmic peptide-binding protein; Identified by similarity to SP:P36634; match to protein family HMM PF00496.
 0.998
sapD
Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
 0.998
sapC
Peptide ABC transporter, permease protein; Identified by similarity to SP:P36669; match to protein family HMM PF00528.
   
 0.990
sapF
Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P36638; match to protein family HMM PF00005.
     0.970
pspF
Sigma-54 depedent transcriptional activator PspF; Identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
  
    0.802
CPS_3773
Hypothetical protein; Identified by Glimmer2; putative.
       0.682
pspA1
Phage shock protein A; Identified by similarity to SP:P23853; match to protein family HMM PF04012.
       0.531
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.482
pspC
Phage shock protein C; Identified by similarity to SP:P23855; match to protein family HMM PF04024.
       0.461
pspB
Phage shock protein B; Identified by similarity to SP:P23854; match to protein family HMM PF06667.
       0.461
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.