STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3860Transporter, BCCT family; Identified by match to protein family HMM PF02028; Belongs to the BCCT transporter (TC 2.A.15) family. (519 aa)    
Predicted Functional Partners:
CPS_3858
Endoribonuclease, L-PSP family; Identified by match to protein family HMM PF01042.
       0.623
CPS_3859
Hypothetical protein; Identified by Glimmer2; putative.
       0.623
CPS_3861
Peptidase, M19 family; Identified by match to protein family HMM PF01244.
 
     0.598
CPS_3862
Identified by match to protein family HMM PF00171.
  
 0.554
betI1
Transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
  
  
 0.515
betI2
Transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
  
  
 0.515
CPS_3863
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.494
CPS_4029
Iron-sulfur cluster-binding protein, Rieske family; Identified by match to protein family HMM PF00355.
  
  
 0.487
betA1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
  
 0.476
betA2
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
  
 0.475
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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