STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3861Peptidase, M19 family; Identified by match to protein family HMM PF01244. (332 aa)    
Predicted Functional Partners:
CPS_3862
Identified by match to protein family HMM PF00171.
 
     0.885
CPS_4678
Conserved hypothetical protein; Identified by similarity to OMNI:SO1267; match to protein family HMM PF07722.
      0.851
CPS_3863
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.816
CPS_3867
Conserved hypothetical protein; Identified by similarity to OMNI:PP2691.
 
     0.791
CPS_4018
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA05398.
 
  
 0.613
CPS_3860
Transporter, BCCT family; Identified by match to protein family HMM PF02028; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.598
CPS_4913
Metallopeptidase, M24 family; Identified by similarity to SP:P46545; match to protein family HMM PF00557.
 
  
 0.446
soxG1
Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268.
 
    0.433
soxG2
Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268.
 
    0.433
CPS_3858
Endoribonuclease, L-PSP family; Identified by match to protein family HMM PF01042.
       0.412
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.